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jgeiger

jgeiger

Web Developer II · Account member

jgeiger's latest activity

Wednesday, January 28 2009
7 OMSAA parameters show no databases was updated in ViPDAC
  • jgeiger
    • Tag set to access, keys
    • State changed from new to invalid
    by jgeiger at 8:53 AM

    It seems that the user data wasn't properly set when launching the instance. The system threw this error RightAws::AwsError: AWS access keys are required to ope...
2 User supplied databases was updated in ViPDAC
  • jgeiger
    • State changed from new to resolved
    by jgeiger at 8:24 AM

    This has been added as of the 1/27/09 image.
3 Save created parameter files was updated in ViPDAC
  • jgeiger
    • State changed from new to resolved
    by jgeiger at 8:23 AM

    This has been added as of the 1/27/09 image.
Tuesday, January 20 2009
13 Visualize/Caching problem? was updated in SNPlotyper
  • jgeiger
    • Tag changed from polymorphism, visualize to bug, caching, polymorphism, visualize
    • State changed from new to resolved
    by jgeiger at 8:26 AM

    It seems that using the cache to store the results of the database search for the genotypes was causing some issues. Since the DB wasn't the bottleneck of the p...
9 Polymorphic markers incorrect on current snplotyper-private master was updated in SNPlotyper
  • jgeiger
    jgeiger commented at 8:20 AM

    It seems that using the cache to store the results of the database search for the genotypes was causing some issues. Since the DB wasn't the bottleneck of the p...
Friday, January 16 2009
12 R clustering not working - R env variable config? was updated in SNPlotyper
  • jgeiger
    jgeiger commented at 9:59 AM

    This was one of the things that I was going to need to deal with when we release the source code, since it's going to be different for everyone.

    I think I had t...
  • jgeiger
    • Tag set to environmental, passenger, r, r_home
    • State changed from new to resolved
    by jgeiger at 9:16 AM

    The R_HOME variable is set in config/initializers/startup.rb

    for me it's set to ENV['R_HOME']='/opt/local/lib/R/' and below that, it properly sets the variable ...
Thursday, January 15 2009
5 Allow more than 400 SNPs to be displayed was updated in SNPlotyper
  • jgeiger
    • State changed from open to resolved
    by jgeiger at 9:43 AM

    The snp limit has been removed, but as you add more, it will get significantly slower.
2 Allow analyses to be created via a GET request for remote application usage was updated in SNPlotyper
  • jgeiger
    • Tag changed from api, visualize to api, grouping, rgd_id, strain_id, visualize
    by jgeiger at 9:35 AM

    You can now create an analysis via a get request by going to /analyses/api_visualize?parameters

    While this exists, it's not going to be useful until we get stan...
11 Update home and support pages with meaningful data was updated in SNPlotyper
  • jgeiger
    • State changed from new to open
    by jgeiger at 9:33 AM